Without looking at a schematic or at least a wiring diagram I'd be shooting in the dark.. I can say and I echo what c5d is hinting at...
There are circuits that will have voltage with the key off e.g. "Clock and Cigarette Lighter" come to mind, the Radio may or may not depending upon model and electronics of the Radio.
As a note to possible help you with understanding a bit more about this type of testing.. the purpose of pulling the fuse then testing from one side of the fuse clip to grd.. if it is a "Hot" circuit you should read voltage from the fuse clip to ground, if it is a Ignition Key controlled Hot Leg then the key will need to be in the on/run or acc. mode to read voltage to grd. Ideally you would read voltage (11
+ 2 volts) from the battery side of the fuse clip and 0 volts from the load side of the fuse clip with the fuse pulled.
I wish you luck in chasing these gremlins down, sometimes they seem to be magic. I've found bulb sockets to be a source of drain, they get old and corrode and form a path to grd and slowly drain the battery. Other places I've found grounds are from the vanity mirror switch, door switch to the hood light wiring.
It also will help if you WRITE DOWN the tests you conduct and voltage and notes. At some point you may find yourself going in circles without documenting your progress
Good Luck and may the force be with you
Bud